Create publication-ready visualization of mass spectrometry alignment results — final_plots • massSight

Create publication-ready visualization of mass spectrometry alignment results

Usage

final_plots(
  merged_ms_obj,
  rt_lim = c(-0.5, 0.5),
  mz_lim = c(-15, 15),
  point_params = list(alpha = 0.25, size = 1.5, stroke = 0.05),
  smooth_color = "#AA9868",
  point_color = "#033C5A",
  label_size = 8
)

Arguments

merged_ms_obj: A Merged MS Object from mass_combine
rt_lim: RT bounds for plotting, default c(-.5, .5)
mz_lim: MZ bounds for plotting, default c(-15, 15)
point_params: List of visual parameters for points (alpha, size, etc.)
smooth_color: Color for smoothing lines, default "#AA9868"
point_color: Color for points, default "#033C5A"
label_size: Text size for annotations, default 8

Value

A cowplot grid of alignment visualization plots