Package index
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MSObject-class - Class to represent mass spectroscopy data.
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MergedMSObject-class - Class to represent merged mass spectroscopy data.
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auto_scale() - Auto Scale
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cd2csv() - CD-To-Csv
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cluster() - Cluster
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consolidate() - Consolidate
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consolidate_isotopes() - Group isotopes with their parent compounds and prepare for matching
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create_ms_obj() - Create MS Object
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detect_adducts() - Detect Adducts in Mass Spectrometry Data
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detect_isotopes() - Detect and label isotopes in an MSObject
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distribution_plot() - Distribution Plot
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evaluate_matches() - Evaluate matching quality using known metabolite pairs
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filter_intensities() - Filter Intensities
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final_plots() - Create publication-ready visualization of mass spectrometry alignment results
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get_known_pairs() - Get pairs of known metabolites between datasets
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get_unique_matches() - Get unique 1-1 matches from mass_combine output
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load_data() - Load Data
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load_ihmp_data() - Load iHMP Data
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mass_combine() - Mass Combine
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run_massSight_app() - Launch massSight Shiny App